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3.0.2.dev3

For users

  • Getting Started
  • Majiq v2 to v3 migration guide
  • Whats new
  • Modulizer
  • Majiq-L (long reads)
  • Command Builder tool
  • Gallery
  • API Reference
  • Citations
MAJIQ
  • MAJIQ: Modeling Alternative Junction Inclusion Quantification
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MAJIQ: Modeling Alternative Junction Inclusion Quantification

MAJIQ uses the results of RNA-seq experiments to analyze alternative splicing.

NOTE: This documentation is for the new release (“Majiq V3”), if you are looking for v2 documentation, it can be found here: https://biociphers.bitbucket.io/majiq-docs-v2/

For users

  • Getting Started
    • Quick overview
    • Installation
    • Building splicegraphs and coverage
    • Correcting for batch effects
    • Splicing quantification
    • What statistic should I use for HET differential splicing analysis?
    • Frequently asked questions
  • Majiq v2 to v3 migration guide
    • v2
    • v3
    • Summary
  • Whats new
    • 3.0.0
    • 2.3.0
  • Modulizer
    • Quick Start
    • How VOILA categorizer works
    • Output
    • Splicegraph Modules
    • Event Types Identified
    • Additional Arguments/Modes
    • Examples
    • Output Files
  • Majiq-L (long reads)
    • VOILA lr: Unified Visualization
    • VOILA lr
    • Citation
  • Command Builder tool
  • Gallery
    • Using MAJIQ HET (ENCODE RBP knockdowns)
  • API Reference
    • Random number generation
    • Build API
    • Events API
    • PsiCoverage API
    • Quantifier API
  • Citations

Indices and tables

  • Index

  • Module Index

  • Search Page

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