Modulizer Index

• Quick Start
• How VOILA categorizer works
  • Decomplexify
  • Identify Modules
  • Categorize Events within Modules
• Output
• Splicegraph Modules
• Event Types Identified
  • Cassette Exons
  • Tandem Cassette
  • Alternative Splice Sites - 5’, 3’, or both - (Alt 5/3)
  • Putative Alternative Splice Sites (P_Alt 5/3)
  • Mutually Exclusive Exons (MXE)
  • Alternative First/Last Exons (AFE/ALE)
  • Putative Alternative First/Last Exons (P_AFE/ALE)
  • Alternative Intron
  • Orphan Junction
  • Exitron
  • Constitutive Junction or Persistent Intron
  • Multi Exon Spanning
  • Other
  • Putative Multi-Gene Regions
• Additional Arguments/Modes
  • Decomplexify stage arguments
  • Definitions for changing and non-changing
  • Other Arguments
• Examples
  • Six module example
• Output Files