rna_majiq.ExonConnections.lsvs

ExonConnections.lsvs(select_lsvs=SelectLSVs.STRICT_LSVS)

construct Events for all LSVs defined by exon connections

construct Events for all LSVs defined by exon connections. LSVs are events where - all connections have different source/target exons (i.e. no exitrons) - all connections are not simplified - at least one event passes build filters (i.e. the event is “reliable”)

Parameters:

select_lsvs (constants.SelectLSVs) –

  • SelectLSVs.STRICT_LSVS: select all LSVs that are either not strict subsets of other events (nonredundant) or mutually redundant source events

  • SelectLSVs.PERMISSIVE_LSVS: select all LSVs that are not mutually redundant targets

  • SelectLSVs.SOURCE_LSVS: select LSVs that are source events, even if they are subsets of target LSVs

  • SelectLSVs.SOURCE_LSVS: select LSVs that are target events, even if they are subsets of source LSVs

Returns:

Events