rna_majiq.Exons.infer_with_junctions

Exons.infer_with_junctions(junctions, full_inference=True)

Return updated Exons accommodating novel junctions per gene

Parameters:

• junctions (rna_majiq.GeneJunctions) – Junctions over same genes. Novel exons will be added or have boundaries extended compared to original annotated exons to match the junctions

• full_inference (bool) – If True, infer denovo exon structure: novel junctions lead to exon extension vs denovo exon vs half exons depending on relative locations. If False, use annotated exon boundaries, and each unique splice site coordinate outside of annotated exons leads to its own exon (of length 1).