rna_majiq.GroupJunctionsGenerator.add_experiment

GroupJunctionsGenerator.add_experiment(sj_junctions, thresholds=ExperimentThresholds(minreads=3, mindenovo=5, minpos=2, max_pctbins=0.6, junction_acceptance_probability=0.5, intron_acceptance_probability=0.95), add_denovo=True)

Add SJJunctionsBins experiment to build group

Parameters:

• sj_junctions (rna_majiq.SJJunctionsBins) – Per-bin read coverage over junctions

• thresholds (ExperimentThresholds) – Per-experiment thresholds to determine if there is enough evidence for each junction

• add_denovo (bool) – Indicate whether to evaluate novel junctions from sj_junctions