new_majiq.Genes

class rna_majiq.Genes(genes)

Collection of genes on Contigs with their coordinates, and ids

Parameters:

genes (_Genes) – Underlying object binding the internal C++ API

See also

Contigs.from_zarr

__init__(genes)

Methods

__init__(genes)
annotate_gene_idx(df)	For now, just add gene_id to df using df.gene_idx
checksum()
from_arrays(contigs, contig_idx, start, end, ...)	Create Genes from Contigs and input arrays
from_zarr(store[, contigs])	Load Genes from specified path/store
overlaps(other[, region_idx])	Get mask over region_idx indicating if they overlap regions in other
slice_for_contig(contig_idx)
to_zarr(store, mode[, consolidated, drop_vars])	Serialize to zarr format.

Attributes

contig_idx	Index of contig on which each region is defined
contigs	Contigs for which these regions are defined
df	xr.Dataset of specified data
end	End coordinate of each region
gene_id
gene_idx
gene_name
start	Start coordinate of each region
strand	Strand direction for each region