rna_majiq.Genes

class rna_majiq.Genes(genes)

Collection of genes on Contigs with their coordinates, and ids

Parameters:: genes (_Genes) – Underlying object binding the internal C++ API

See also

Contigs.from_zarr

Methods

`__init__`(genes)
`annotate_gene_idx`(df)	For now, just add gene_id to df using df.gene_idx
`checksum`()
`from_arrays`(contigs, contig_idx, start, end, ...)	Create `Genes` from `Contigs` and input arrays
`from_zarr`(store[, contigs])	Load `Genes` from specified path/store
`overlaps`(other[, region_idx])	Get mask over region_idx indicating if they overlap regions in other
`slice_for_contig`(contig_idx)
`to_zarr`(store, mode[, consolidated, drop_vars])	Serialize to zarr format.

Attributes

`DF_VARS`
`IDX_NAME`
`ZARR_GROUP`
`contig_idx`	Index of contig on which each region is defined
`contigs`	Contigs for which these regions are defined
`df`	xr.Dataset of specified data
`end`	End coordinate of each region
`gene_id`
`gene_idx`
`gene_name`
`start`	Start coordinate of each region
`strand`	Strand direction for each region