rna_majiq.PassedJunctionsGenerator
- class rna_majiq.PassedJunctionsGenerator(junctions)
Accumulator of
GroupJunctionsGeneratorto create updatedGeneJunctions- __init__(junctions)
Methods
__init__(junctions)add_group(group[, min_experiments])Update passed junctions with
GroupJunctionsGeneratorbuild groupadd_junction(gene_idx, start, end)Pass the specified junction
get_passed([denovo_simplified])Return
GeneJunctionswith updated flags and novel junctionsAttributes
num_denovoNumber of denovo junctions passing filters (excluding known denovos)
num_knownNumber of 'known' junctions (originally passed in)