new_majiq.PassedJunctionsGenerator
- class rna_majiq.PassedJunctionsGenerator(junctions)
Accumulator of
GroupJunctionsGenerator
to create updatedGeneJunctions
- __init__(junctions)
Methods
__init__
(junctions)add_group
(group[, min_experiments])Update passed junctions with
GroupJunctionsGenerator
build groupadd_junction
(gene_idx, start, end)Pass the specified junction
get_passed
([denovo_simplified])Return
GeneJunctions
with updated flags and novel junctionsAttributes
num_denovo
Number of denovo junctions passing filters (excluding known denovos)
num_known
Number of 'known' junctions (originally passed in)